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Then the full synchronization of all the sequences relative to the pattern sequences n has its own global distance: (19).
(In other words, insertions in the sequences, relative to the profile, are trimmed from the alignment).
Their sequences relative to nestin cDNA are shown in Fig. 1E.
The segmental locations of onset of gradient change do not follow rigidly fixed sequences relative to each other.
Figure 3 shows an alignment of their 5'NCR sequences relative to the consensus sequences of the correctly classified subtype 1a and subtype 1b strains.
Relationships described by MLSA are quite different from those observed using CRISPR locus sequences supporting the rapid evolution of CRISPR sequences relative to the rest of the genome.
We first compared the number of variations in the SVR or NR sequences relative to a genotype 1a or 1b population consensus reference sequence.
Users can then view the trees to make taxonomic assignments based upon phylogenetic position of query sequences relative to known ones.
Here we report an intensive analysis of the phosphatomes of M. xanthus and S. cellulosum in which we constructed phylogenetic trees to position these sequences relative to PPs from other prokaryotic organisms.
We limited the study to the following T7-primers and looked in detail to their 3'spacer sequences relative to the original Eberwine primer sequence (fig 2) : The Affymetrix primer (primer 1), also described as the "LinAmp1 primer" [7].
Nevertheless, if we compare the ratio between SINE and LINE sequence around the HOX-gene clusters, we find that the closer we move towards the HOX genes the fewer LINE sequences relative to SINE sequences we observe (Figure 10).
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