We recognize that the demographic analyses of both the subsubtype A3 epidemic in West Africa and the local epidemics in Guinea-Bissau (CRF02_AG cluster 2 and subsubtype A3 cluster 1) are based on relatively few sequences (reflected by large HPD intervals, Figures 2a, c d), and analyses of larger datasets are needed to confirm the results presented in this study.
Interestingly, when compared to the sequence logo representing the alignment of mouse Class I and Class II ORs, the zebrafish OR logo shows lower conservation amongst the predicted zebrafish receptor sequences (reflected by the more numerous and shorter letters at individual positions in the logo), revealing the greater diversity within the zebrafish vs. mouse OR superfamily (Table 1).
Thus, it is likely that the sampling of rDNA sequences, as reflected by BES survey sequencing, is reflective of a true rDNA content difference in the nuclear genomes of tomato and potato.
One of them refers to the fact that in coding sequences there is a 3-base periodicity in the nucleotide sequences as reflected by all possible correlations of single bases, duplets and triplets [49], [42], [61], the FDD of triplets [62], the autocorrelation function [63], [59] or by the mutual information function of single bases [64].
Members of the PSMR subclass appear to have very different selective constraints placed upon their sequences as reflected by the variable mean dS/dN values for each PSMR homologue in comparison to either SMP or SUG subclasses (Table 3 and Additional file 2).
Variations in the amino acid sequences are reflected by small changes in the spatial display of the loops that contribute to the wide range of biological activities observed in these peptides, as a single amino acid substitution can change the spectrum of activity.
Further intronic sequence polymorphisms reflected by the 7th and 8th digits were not considered because intronic sequences were not part of our HLA genotyping strategies and because only a small number of alleles have such known designations (Robinson et al. 2006).
This lack of continuity of probe sequence was reflected by the discontinuity of the hybridisation signal but did not hamper the identification and tracking of any painted chromosome.
In addition, TE encoded THAP domains appear to have greater sequence diversity, reflected by the branch lengths, than host encoded THAP domains, consistent with a TE origin of the domain.
In the present study, we apply such functions to compute distances between plant individuals as operational taxonomic units (as the hosts) from molecular data matrices that exhibit significant intra-taxon sequence heterogeneity reflected by cloned ITS data (as the associates).
Besides, the interdomain region, 17-residue insert and C-terminal tail were all found to evolve in vertebrates under more relaxed selective constraints than the rest of the sequence, as reflected by significantly higher ω values (Mann-Whitney P = 0.03, P = 0.02, P = 0.007, respectively).
