Sentence examples for sequences prediction from inspiring English sources

Although CCDs are recognizable from protein sequences, prediction of oligomer state remains challenging especially for trimeric states and above.

In contrast to pairwise comparison, where we only rely on two sequences, prediction would allow to use training data, therefore we expect that the performance would improve for this task.

In addition to correcting some of the inaccuracies in gene prediction from transcript sequences, prediction from genome sequence allows ab initio prediction of any genes that were not expressed under the experimental conditions used.

Based on the genome sequence of Theobroma cacao (Criollo) [ 1], a set of 28,798 predicted gene models was used to extract all predicted coding sequences (CDS) and for those genes with a 3' untranslated region (UTR) sequences prediction, we extracted 22,489 additional 3'UTR sequences.

In the two R. palustris aquaporin sequences, prediction of membrane protein topology using Topcons 29 confirmed six transmembrane domains in the following residue positions: 10 30, 35 55, 83 103, 131 151, 162 182, 206 226 (Fig. 6) connected by 5 loops (Loop A to Loop E according to the nomenclature in Kruse et al).

It is important to note that for domains with less than 5 sequences, predictions by PSIPred [ 21, 22], GlobPlot [ 24] and SEG [ 23] will not be executed.

All coding sequences predictions were manually checked for conservation in case of multiple hits, and only the alignments with best-hit results were selected from each genome.

The von Heijne [ 20] signal sequence prediction was used to predict the start of the mature laccase.

Gapped Ancestral Sequence Prediction program (GASP) [ 25] was used to predict ancestral sequences from phylogenetic trees and the corresponding multiple sequence alignments.

These simplistic descriptors have been successfully applied to human gene regulatory sequence prediction, enhancer identification, etc.

A study of the peptide sequence prediction based on the steered molecular dynamics (SMD) method is presented.