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For alignments with 500 sequences or more, FastTree 2 is at least 100 times faster than either PhyML 3.0 or RAxML 7.2.1.
Among the 112 polymorphic in vitro SNPs of the genotyping assay, 101 were previously identified in alignments containing 10 sequences or more from the Aquitaine population and were used to assess the reliability of allele frequency estimates based on sequencing data.
Putative SNPs were annotated when the least represented allele was present in two EST sequences or more.
This linear relationship strongly suggests that longer sequences or more taxa than those examined here are unlikely to increase the precision of the divergence time estimates.
Metatranscriptome data sets typically consist of hundreds of thousands of 454 sequences, or, more recently tens of millions of Illumina sequences per sample.
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If there is no such sequence or more than one such sequence, the source sets.
We prove that any fractal measure μ obtained from an affine iterated function system possesses a sequence of complex exponentials which forms a Riesz basic sequence, or more generally a Bessel sequence, in L2 such that the frequencies have positive Beurling dimension.
Contigs that contained a coding sequence or more than 5 mismatches in the miRNA were excluded: miRNA* duplex.
Re-sequencing or more extensive haplotype analysis of this region in this and other populations might elucidate the matter.
Hits with less than 40% (genus) or 80% (species) similarity in amino acid sequence or more than 20% difference in protein length were discarded.
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