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These pairs were obtained by us taking as base the human chromosome sequences of the ENCODE project and their corresponding annotation.
To this end, we create a benchmark from the human chromosome sequences of the ENCODE (ENCyclopedia of DNA elements) project [11].
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We reconstructed a phylogenetic tree based on the full-length sequences of the encoded Ugt5 proteins (Fig. 5B; Fig. S3).
The conservation in the sequences of the encoded RPs induced by gene conversion is not unexpected as these proteins are highly conserved across a wide range of taxa (Alksne et al. 1993; Manuell et al. 2005; Ross et al. 2007).
Rate-limiting steps of combinatorial phage display library selection are (i) the counting of transducing units and (ii) the sequencing of the encoded displayed ligands.
Each Mitocomp2 gene record shows the exon-intron structure of the gene, its annotated genomic sequence, the mRNA or CDS sequence and the amino acid sequence of the encoded polypeptide.
Furthermore, the various manipulations could modify the primary sequence of the encoded gene product (Andersen, 2011), with the downstream risk of affecting the function of the gene products (Kilaru et al., 2009).
The complete genome sequences of the Acholeplasmataceae encode the trigger factor (TF), dnaK, dnaJ, grpE and hrcA.
In this study, sequences of the genes encoding for six major structural proteins of WSSV from different geographical locations were compared with a WSSV isolate from south India.
DNA sequences, genomic positions of the novel exons and a comparison of the amino acid sequences of the (hypothetically) encoded protein isoforms are annotated in Figure S1.
The sequences of the proteins encoded by these genes show a large degree of homology to bacterial LRR-protein kinases of unknown function.
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