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In each subsequent step, only the representative sequences of clusters generated in the previous step were used (Figure 1).
Accordingly, the residues at analogous to H28 position of the alignment are found to be polar/charged in most of the sequences of Clusters II, III, and V.
Finally, we sought to identify transcription factor binding motifs in the DMR sequences of clusters 1 and 2 by the Hypergeometric Optimization of Motif Enrichment (HOMER) analysis [ 61].
Next, the clusters were sorted by decreasing cluster size and subsequently the 'cluster representative sequences' of clusters with more than 19 sequences per sequence run were clustered at 99.5% homology.
Similar(56)
Therefore, we apply the p-spectrum to sequences of cluster numbers of optical flows as that done for the LCSS kernel.
As far as Cluster 8 is concerned, one of the signatures could be traced among 18/37 sequences of Cluster 7 and with negligible frequency in other clusters.
On March 1 , 2008 the UniGene database of NCBI contained 41,227 and 23,078 representative sequences of clustered ESTs of wheat and barley, respectively.
The topology of OMP tree is slightly different from the other two, in that some of the sequences of cluster A are intermixed with those of cluster C.
Nucleotide sequences of the mapped EST markers were obtained from each cDNA database that provides representative sequences of clustered or assembled cDNA.
An analysis of the sequences of cluster II (154 sequences specifically repressed during appressorium-mediated penetration) revealed enrichment for functions involved in signaling (Additional file 10: Table S5_B).
The number of unique sequences of clustered ESTs from human breast tumors is 6501[ 12], so we estimated t=6500 as the average cellular proteome size of differentiated cells.
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