We [then] go back to the genome models [and] see whether your peptide sequences match what has been deduced from the genome sequence.
The Match function may be "strict", that is, two sequences match if they are equal.
Mirroring predictions based on the principle of minimum frustration, fast-folding sequences match their Gō-like counterparts in both topological mechanism and transit times.
The promoters are usually considered housekeeping (σA-dependent) if their −35 and −10 promoter sequences match the generally accepted consensus of housekeeping promoters.
The promoters are usually considered "vegetative" or "housekeeping" if their −35 and −10 promoter element sequences match the generally accepted consensus of housekeeping promoters and the respective genes are expressed during exponential growth under optimal conditions.
Among these, 80 sequences match DNA sequences from species used in this study (Supplementary Table S2).
The amino acid sequences deduced from the cDNA sequences match well with the amino acid sequences determined by Edman degradation.
In addition, we found that few EST sequences match these short-form variants of the Ugt cDNAs.
Even for the β-Globin cluster that presents extensive intergenic transcription ([16] and figure 1b,c), more than 95% of the transcribed sequences match annotated genes (see fig 1b,d).
A stable target-probe heteroduplex produces a detectable signal, whose interpretation depends on the experimental details, such as how target processing steps affect transcript abundance in gene expression experiments [10], [11], and whether probe sequences match sample SNP alleles [12].
Although a significant portion of sequences in each sample has been classified as eukaryotic or bacterial in origin, subsequent analysis showed that 825 November and 2352 June "bacterial" sequences match putative prophage elements in sequenced bacterial genomes, suggesting that some portions of these sequences may still be of viral origin.
