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In organisms containing multiple rRNA genes, the homogeneity of primary sequences is believed to be maintained through gene conversion by homologous recombination [2], [28].
Global hypomethylation of repetitive DNA sequences is believed to occur early in tumorigenesis.
The recombination via repeat sequences is believed to be responsible for extensive structural change.
At the intra-specific level, recombination through small repeat sequences is believed to be responsible for large gene-order shuffling and the emergence of new open reading frames, some of which have been involved in Cytoplasmic Male Sterility (CMS) [ 14, 15].
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2% of the sequences are believed to be putative miRNAs (Table 3), and the remaining 46% of short sequences failed to be classified based on the current silkworm genome sequence assembly.
Generally speaking, nsp3 and nsp4 are reported to be inserted into the ER membrane via their hydrophobic sequences [24], [25], while other nsps lacking hydrophobic sequences are believed to localize in the cytoplasm [2].
The fact that the NR dataset has a higher percentage of sequences with assigned peptides and a higher average coverage seems intuitive as is a reflection of the fact that these sequences are believed to be more reliable, because, in general, they are experimentally derived.
These sequences are believed to be internally generated because external spatial input stays stationary in these situations.
Antisense sequences are believed to function in gene regulation by modulating sense mRNA transcription, maturation, transport, stability and translation.
Therefore, cpDNA protein-coding sequences are believed to provide useful information for exploring phylogenetic relationships among plant species.
All these data implied that miRNAome, as small RNA transcriptome [ 38], is distinct and complex though miRNA sequences are believed to be conserved across different plant families [ 23, 29, 68].
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