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We also analyzed the C terminal sequences for potential GPI anchors using the big PI predictor [39].
When we analysed the human CCN2/CTGF and rat CCN3/NOV protein sequences for potential N-glycosylation sites using the NetNGlyc algorithm (http://www.cbs.dtu.dk/services/NetNGlyc/), we found that both proteins carry a potential N-glycosylation site (Figure S5).
The Neural Network Promoter Prediction v.2.2 [68], TRES – Transcription Regulatory Element Search, which performs searches within the TRANSFAC database [69] and the PromScan program, that generates an alignment of known sequences and matrix frequency [70], were used to scan DNA sequences for potential binding sites.
A focused search of all RVP-encoded protein sequences for potential homologs of the minor capsid protein failed to detect any significant sequence similarity.
We previously identified a number of soybean miRNAs through high throughput sequencing of a small RNA library and examining WGS and EST sequences for potential precursors [ 18].
The purpose of our study was to evaluate the efficacy of the HRM method in screening large sequences for potential mutations.
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Both constructs carry a N-terminal pelB signal sequence for potential periplasmic localization, the anti-laminin L36 scFv gene (VH and VL domains joined by a flexible linker), and C-terminal tags for immunodetection and purification (yellow box).
We systematically investigated the MYCN-3′UTR sequence for potential miRNA binding sites.
This information, based on PBM alone, can be used to score a sequence for potential TFBS.
Candidate nonspecific targeting sites reported by the CRISPR target finder tool were sequenced for potential off-targets.
Using NetPhos 2.0, we analyzed the MSH2 protein sequence for potential p-Y sites that may be targeted by NPM-ALK.
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