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This result is unexpected if indeed these probe sequences exist as single copy sequences in the B73 genome.
Reference sequences exist as the genomes of T. cacao cv.
About 60% of the X. fastidiosa unique sequences exist as tandem gene clusters of 6 or more genes.
However, only a few full-length elements were found for these abundant families; most of their sequences exist as fragments or solo LTRs.
GemSIM is most suited to simulating resequencing or metagenomic projects where known reference sequences exist, as it relies on the presence of a reference sequence to initially generate reads (error models are then superimposed on top of the read).
Similar(55)
In the env tree one of the three sub-clusters consisted of intermingled HIV-1G and CRF06_cpx sequences, unlike in the gag tree where CRF06_cpx sequences existed as a distinct clade.
The strength of these signals suggested that the TRAP5 probe sequence existed as repeats in the testis samples.
Other threats exist as well.
Some correlations in substitution rates in repeat sequences exist, but, as for silent sites, these have been influenced by nucleotides under purifying selection.
The arrows pointing to the Glimmer prediction indicate MS peptides that confirm areas of the protein sequence where other models predicted gaps (TgTwinScan_2224 and TgTwinScan_2226 as well as 641.m00177 and 641.m00176), suggesting that the continuous protein sequence exists at least as one splice variant.
We would like to emphasise that our results do not speak against the hypothesis that pre-existing temporal firing sequences exist in the hippocampus, as suggested by other authors (e.g. Dragoi and Tonegawa, 2011, Nature).
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