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Moreover, the PCR products for these transgenes were sequenced, showing the correct sequences (data not shown).
The amino acid sequence deduced from bxy3A was aligned with other β-xylosidase sequences (data not shown).
The DFA plots for the shuffled sequences (data not shown) did not exhibit crossover points, with the same linear trend being observed across all box sizes.
The monophyly of the group is confirmed using ldh nuclear partial gene sequences (data not shown).
We have verified this in the case of telomeric sequences (data not shown).
Similar results were obtained with two different siRNA sequences (data not shown).
We could not construct a phylogenetic tree using these sequences (data not shown).
The responsiveness of the cells was also tested with different naturalistic stimulus sequences (data not shown).
We detected fragments of known TE profiles in only 14% of these unclassified consensus sequences (data not shown).
There were no significant differences in the frequencies of any single miRNA seed match between SVR and NR sequences (data not shown).
The first step of our phylogenetic analysis was the comparison of the protein sequences of rice, poplar and Arabidopsis with P. patens protein sequences (data not shown).
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