Therefore, we decided to produce mutant sequences by replacing the nucleotides in the original sequence at positions 10 to 16 and 33 to 39.
For these probes, we generated all possible probe sequences by replacing all R nucleotides with all possible combinations of A and G nucleotides.
Given a function S i, j) defining the matching score for A i and B j and using g as the score for a gap, we have: (2) This recursion is generalized to allow using a PO-MSA instead of one of the sequences by replacing the notion of 'prefix of length i' with 'path leading up to node A i '.
Hereby we report our findings concerning a structure-activity study conducted on a model sequence by replacing a glycine residue with a variety of flexible residues (i.e. ω-amino and α,ω-diamino acids).
The first group consists of sequence driven features, which are generated directly from sequence through converting the protein sequence into a numeric sequence by replacing each amino acid with equivalent numeric values, counts, etc.
For instance, a user could simulate amplicon sequencing by replacing clonesim with a program that simulates amplicons, and use the remaining flowsim pipeline to simulate the 454 sequencing process.
Using whole shotgun re-sequencing of F. graminearum we have comprehensively completed the genomic sequence by replacing unknown bases, placing supercontigs within their correct loci, correcting assembly errors, and inserting new sequences which include for the first time complete AT rich sequences such as centromere sequences and subtelomeric regions.
We have comprehensively completed the genomic 36,563,796 bp sequence by replacing unknown bases, placing supercontigs within their correct loci, correcting assembly errors, and inserting new sequences which include for the first time complete AT rich sequences such as centromere sequences, subtelomeric regions and the telomeres.
Experiments were acquired on a Bruker Avance III 500 MHz spectrometer at 298 K. 1D H NMR spectra were recorded using the pulse sequence in Figure 2. The same pulse scheme was implemented into a standard TOCSY sequence by replacing the last hard 90° pulse by a soft pulse applied during a weak field gradient.
In case an alignment A' in A contains some gaps, each sequence S in A' that contains gaps is replaced by the set of all sequences obtained by replacing the gaps in S with all possible nucleotide symbol combinations (or the set of nucleotides actually observed at the gap containing position).
To examine the effect of the inferred recombination on the population structure of both species, trees were constructed from core genome sequence alignments from S. aureus and S. epidermidis, respectively, and from the same alignments with inferred recombinant sequences masked by replacing them with gaps.
