Each data instance in the dataset had the following attributes: amino acid sequence, wide- type amino acid identity and sequence position, mutant amino acid identity, pH value, and free energy change.
Rather, there are broad-based, sequence-wide differences in the diversity of these repertoires.
If all local parameters are made zero, the model is a fully homogeneous random field, and classification only depends on sequence-wide stability of latent state.
The position-dependent local parameters, which make the model heterogeneous, allow the model to interpolate between a homogeneous sequence-wide hypothesis and one that ignores correlations.
Thus, (2) The pairwise features fpair and the corresponding parameters ρ model the sequence-wide correlation of adjacent nodes for each class.
Still, HHCRF performed better than LR, especially for the datasets with inversion noise (ɛ = 0.25), which suggests that HHCRF's pairwise parameters ρ capture sequence-wide stability properties and contribute to the classification task beyond simply filtering out observation noise.
Then, they examine many samples of the same species taken from the same location, noting the sequence of wide and narrow rings, year-by-year, decade-by-decade.
With the sequences of complete genomes available [1] [4], and accelerating technologies for high-throughput sequencing [5] genome wide sequence analyses of individual samples will soon become reality.
We look for unique sequences of wide and narrow rings as well as particular or unique features of the wood structure.
In this paper, experimental results are presented using nine standard video sequences with wide range of motions (i.e., smooth to high motions) and resolutions (QCIF to 4CIF) [26].
