Sentence examples for sequence visualisation from inspiring English sources
WGS contigs containing DNA from the aby gene cluster were identified by BLAST searching, and were manually annotated by using Artemis sequence visualisation and annotation software 35 and BLAST search tools.
Exploring sequence visualisation across different sites reveals a set of features that should be supported by a single, reusable, and well documented piece of code, capable of painting sequences on the web in a consistent manner.
Genes were predicted with Prokka [ 52], Artemis was used for sequence visualisation and manual editing of annotations [ 53], and RATT was used to transfer annotations between genomes with similar cassettes [ 54].
Another possible extension is using this component as a base for multiple aligned sequences visualisation.
Some may prefer to add a sequence for visualisation of cartilage, such as a proton-weighted or 3D DESS sequence.
Furthermore, this pulse sequence enables visualisation of parenchymal lung disease, which has so far been impossible with MRI (Fig. 6).
Inspection of contig assemblies using the next-generation sequence assembly visualisation software Tablet [ 50] showed that Newbler 2.3 was discarding read overlap information in deriving the assembled contig sequence.
Unenhanced heavily T2-weighted MR sequences allow visualisation of the static fluid content of the urinary tract, are most useful with dilated or obstructed collecting systems, and may be completed by means of gadolinium-enhanced excretory MR urography as needed [43].
As well as detecting major strokes, these sequences allow visualisation of small strategic infarcts (such as within the thalamus and other subcortical nuclei) and small vessel ischaemic white matter damage.
TOF sequences allowed the visualisation of vessels in all xenograft tumours and revealed larger vessels in co-transplanted tumours (Table 2).
ESPript (Easy Sequencing in PostScript) (http://www.ipbs.fr/ESPript) [ 69] was used for rendering the result which facilitates the rapid visualisation of sequence alignment via PostScript output.
