Sentence examples for sequence vista from inspiring English sources

For each of the candidate enhancer element, we retrieved from VISTA enhancer browser information such as, genomic sequence, VISTA enhancer ID, conservation depth, and name of neighboring genes, tissue specificity and image data (Additional file 3: Table S2).

CU and LF performed the sequence analysis and the VISTA global alignments.

Levels of conservation between sub-genomes across intergenic sequence was visualised through VISTA plots for each region.

The cartilage volume was measured using the VISTA-SPAIR sequence and values determined with ArthroLab's fully automated quantitative MRI (qMRI) system (ArthroLab Inc ,Montreal, QC, Canada) as described [ 13].

Ext was assessed using the sagittal three-dimensional intermediate-weighted sequence with fat suppression (VISTA-SPAIR), which allows for a precise evaluation of the extent of the extrusion, and scored as absence or presence of partial or complete extrusion detected in any of the three segments of the meniscus as described [ 3, 9].

The advent of robust, affordable and rapid genome sequencing also opens the vista of large-scale comparative genomics of development across the phylum Nematoda [ 29] to better understand the diversity of the phylum and also place the remarkable C. elegans model in context of its peers.

Meniscal extrusion was assessed using the VISTA-SPAIR sequence, which allows for a precise evaluation of the extent of the extrusion, and scored as absence or presence of partial or complete extrusion detected in any of the three segments of the meniscus as described [ 14, 16].

Conserved noncoding sequences were visualized and detected with VISTA [ 27] using the fugu sequence as the reference sequence.

As more genes related to metal metabolism are discovered, facilitated by the genome sequencing projects, new vistas will be opened up for development of efficient transgenic plants for phytoremediation.

Using human as the base sequence for genomic sequence comparisons (VISTA), we annotated numerous potential cis-elements.

Older pairwise methods for detecting sequence conservation (e.g. VISTA and PipMaker [ 37, 38]) required the careful selection of species to avoid biasing predictions by including closely related species (e.g. human, mouse, rat).