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The software provides intuitive access to the selected genomic region through three interface components: a colorful graphical display showing a schematic of genes and features; an annotated sequence view in which features and genes are highlighted directly on the sequence; and the selectable raw sequence.
Example For demonstration, the authors have coupled the sequence view with a BioJS 3D component.
We have developed NGSView (Next Generation Sequence View), a generally applicable, flexible and extensible next-generation sequence alignment editor.
We introduce NGSView (Next Generation Sequence View), an open source alignment editor and visualization tool, designed to address the issues mentioned above.
As shown in Figure 1, PeanutDB web interfaces can be essentially categorized into three types: data grid views, sequence view and alignment view.
A drag and click across this region brings up the sequence view, from which the specific peptide sequences and underlying DNA sequence can be examined.
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A stunning sequence views them from a distance through a chain fence as they frolic in the waters in the Gulf of Aden.
PeptideNavigator provides users with numerous viewing options, such as scatter plots, sequence views, and sequence frequency diagrams.
Finally, component and sequence views demonstrate how rules are created for data quality management, and how data quality is evaluated, and queried from the developed system.
From the resulting tables, links are provided directly to entries in large public databases (Uniprot, NCBI) as well as to detailed sequence views.
DNA sequence viewing, editing and basic manipulations were performed using Bioedit [ 51].
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