The sequence version number is designated by _2.
In the nomenclature suggested here, the name of a protein starts with AC_ followed by the accession number and the sequence version number.
The identity of a protein species giving access to its initial amino acid sequence, which is observed directly after its protein synthesis (initial protein species level), is defined by the protein database accession number and sequence version number.
S should be followed by D for deletion (SD_), if amino acids are missing compared to the canonical protein record described by the protein accession and sequence version number.
Simple sequence repeats were identified in the N. crassa genomic sequence version 3 (http://www.broad.mit.edu/annotation/fungi/neurospora/).edu/annotation/fungi/neurospora/
A list of CpG islands in the human genome (sequence version hg18) was obtained from the UCSC genome browser site url.
In addition, sequence version discrepancies between the databases lead to the removal of approximately 3000 genes.
Our first model was a multivariate HMM that is a sequence version of naive Bayes.
The C. elegans genome sequence version WS147 was downloaded from the WormBase website (http://www.wormbase.org/).org/
The "S288C 2010" S. cerevisiae reference sequence version was determined from an individual AB972 yeast colony.
For each SNP and its flanking sequence, a BLAST was performed to the genome sequence version SL2.40.
