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For those time series of small time span but large sequence trend changes, time segment calculated by PAA_ERR would get very close to the original sequence, and resulted in poor final segment results.
However, known natural sequences usually represent only a subset of all existing binders biasing the observed sequence trend.
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Such analyses have been thought to be an effective way to identify important sequence trends and probable poly(A) signals [ 7, 12, 27].
In case the observed sequence trends are caused by the selection for cleavage promoting and stabilizing amino acids in the beginning of HEG coded proteins, then it is interesting to note that alanine has been chosen from the set of six amino acids with similar properties.
A list of the sequencing trend for each cDNA library is presented in Table 3.
In most cases, they have alternate R and Y-dominant stretches along their genome sequences (Trend III, Table 2).
Obtaining formaldehyde from methanol is an exemplary and important process in which the following sequence (1) trend is maintained.
To further understand the cis-regulatory evolution, we explored the sequence evolutionary trend of 10-mer DNA motifs, discovered in a subset of the CNE enhancer data set using the MEME motif discovery algorithm (Bailey and Elkan 1994).
The simulation results confirmed that stacking sequence [0/903/02/903/0]s trends to highlight the matrix failure mode, while the stacking sequence [03/90/03/90/0/90]s trends to highlight the delamination mode.
In practice this sorting makes it much easier to visualize sequence divergence trends for the genes or proteins in a reference sequence.
To deal with seasonality, the ARIMA model is extended to a general multiplicative seasonal ( {text{ARIMA}};(p, d, q) times (P, D, Q)^{s} ), where the time sequence demonstrates both trend and seasonal trend; non-stationary sequence is transformed into a smooth one via differential transformation.
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