Sentence examples for sequence translations from inspiring English sources

The complete CDS (coding sequence) translations from each frankial genome were analyzed with SignalP 3.0, and then scanned for transmembrane domains with TMHMM v. 2.0 [ 22, 27].

Otherwise, the longest ORFs were selected during step three, based on the results obtained by using the EMBOSS program that restricted sequence translations from the negative strand.

Cel5A and Cel7B peptides were identified by matching MALDI-TOF MS spectra with amino acid sequence translations of open reading frames in the T. cellulolyticus draft genome.

The ORFs were selected during the first step when the assembled sequence translations aligned to proteins within the NCBI NR database with a Blastx e-value better than 1 × 10-8.

The fragment masses were analyzed using the MASCOT server (Matrix Science, London, United Kingdom) and compared with amino acid sequence translations of all open reading frames in our in-house T. cellulolyticus draft genome.

For this, we generated partial sequence translations by rpstBLASTn against a collection of fish-specific orthologies (protein sequences from fiNOG from eggNOG version 3) [ 54] with e-value below 10-9, which yields 52,729 (P. brachycephalum and 34,733 (Z. viviparus) hits in a total set of 7,374 fiNOG-orthologies.

We then used the sequence translation tool at the European Bioinformatics Institute (transeq) to translate the nucleotide sequences from Geneservice into peptide sequences.

Variants that map to coding regions can affect protein sequence, translation rate, and alternative splicing, all of which influence protein function.

Extension of the 5′-end of transcripts compromises coding sequence translation as expected.

Sequence translation was done by transeq [ 32]; frame-shifts were corrected manually.

The sequence translation, exon organization, the multiple alignment and protein signature sequences have been analysed with Biology workbench.