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A detailed characterization of the sequence traits for both SIDER subfamilies unveils major differences.
Standard focus in studying TEs is mostly on characterization of sequence traits that might be responsible for their mobility (López-Flores and Garrido-Ramos 2012).
Due to the remarkable LTR sequence variability and the lack of large conserved sequence traits, at this stage the 3' boundaries of the 3' LTR within the sequenced clones could not be determined.
SIDERs represent the most abundant TE family described in trypanosomatid genomes to date and can be divided into two subfamilies, namely SIDER1 and SIDER2, which present similar yet distinguishable sequence traits.
The intra- and inter-genomic characterization of SIDER elements in three currently sequenced Leishmania genomes enabled the first direct characterization of SIDER1s, which are more heterogeneous than SIDER2s, lack the second 79 nt signature sequence of trypanosomatid retroposons and share sequence traits with DIRE elements.
Despite the low genetic diversity, the unigenes aligned to the genes: Exp1, DGCR-like protein, HnRNP, RimL/acetyltransferase-domain protein, and Mo25-like protein displayed alignment variants featuring a possible lack or insertion of sequence traits in their CDS, coding sequences.
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Besides its ability to bind to phospholipid membranes, the N-terminus contains an additional Leu-Pro-Gly stretch, which is a unique sequence trait, and the heme cavity is significantly altered with respect to other nitrophorins.
Recent technological advances are enabling us to span from genetic sequence to traits, and then from traits to ecological dynamics.
Individuals have "intelligible genders" (Butler 1999, 23) if they exhibit this sequence of traits in a coherent manner (where sexual desire follows from sexual orientation that in turn follows from feminine/ masculine behaviours thought to follow from biological sex).
Dinoflagellate transcripts of nuclear encoded genes have polyA-tails and a unique dinoflagellate specific spliced-leader (SL) sequence [31], traits that have not been reported in bacteria.
Tables 1, 2 and 3 - Regressions between rates, clade size and body size for mitochondrial sequence data Traits are measured as differences in values between sister-pairs of mammalian clades.
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