Sentence examples for sequence tools from inspiring English sources

Internal Floragenex sequence tools and custom PerlScripts were used for processing of raw Illumina/Solexa data.

Information analysis was originally performed using the Delila sequence analysis system, which included a language to process nucleic acid sequences, and a library of sequence tools to retrieve and process various types of sequence data.

The PDB-Pfam derived residue information serves as a reference to evaluate the performance of selected sequence tools for predicting the fold-critical residues ('H'E'I'T'S','T','S' based on DSSP annotation) and remnant residues (gaps '-' or '?') for the set of 6599 Pfam domains.

PlcR boxes were searched in the sequenced genome of the ATCC14579 strain using the 'find sequence' tool of Vector NTI (Invitrogen).

Homologies were confirmed using the blast 2 sequence tool [97].

We used the National Center for Biotechnology Information basic local alignment sequence tool, BLAST (www.ncbi.nlm.nih.gov/blast/Blast.cgi).nih.gov/blast/Blast.cgi

Prediction was carried out using the SIFT sequence tool through PSI-Blast searches against UniProt - SwissProt databases (release 57.15, April 2011).

The BLAST 2 Sequence Tool [ 44] was used to compare the ends of both forward and reverse sequences obtained from each clone.

We used the sequence tool in the HIV database to randomly select only one sequence from each patient or transmission cluster in groups 1 3 to avoid skewing.

The tandem repeat and homologous pairs were aligned with the BLAST 2 SEQUENCE tool available on National Center on Biotechnology Information (NCBI) (http://blast.ncbi.nlm.nih.gov/Blast.cgi/).nih.gov/Blast.cgi/

We obtained the list of 23 co-regulated genes from the YEASTRACT database [ 41] and the upstream regions of those genes using the RSAT [ 42] retrieve sequence tool.