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PlcR boxes were searched in the sequenced genome of the ATCC14579 strain using the 'find sequence' tool of Vector NTI (Invitrogen).
Homologies were confirmed using the blast 2 sequence tool [97].
We used the National Center for Biotechnology Information basic local alignment sequence tool, BLAST (www.ncbi.nlm.nih.gov/blast/Blast.cgi).nih.gov/blast/Blast.cgi
The BLAST 2 Sequence Tool [ 44] was used to compare the ends of both forward and reverse sequences obtained from each clone.
The tandem repeat and homologous pairs were aligned with the BLAST 2 SEQUENCE tool available on National Center on Biotechnology Information (NCBI) (http://blast.ncbi.nlm.nih.gov/Blast.cgi/).nih.gov/Blast.cgi/
Prediction was carried out using the SIFT sequence tool through PSI-Blast searches against UniProt - SwissProt databases (release 57.15, April 2011).
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Internal Floragenex sequence tools and custom PerlScripts were used for processing of raw Illumina/Solexa data.
After his group utilized a new gene-sequencing tool, they posted some unpublished genome data online.
In the first stage, a Gantt chart sequencing tool was converted to a scheduler's information system.
Each pair of sequences was aligned using the "BLAST 2 sequences" tool accessed through the Biology WorkBench of the San Diego Super Computer (http://seqtool.sdsc.edu/CGI/BW.cgi).sdsc.edu/CGI/BW.cgi
However, a universal de novo sequencing tool is still missing.
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