Sentence examples for sequence to run from inspiring English sources

MEGA can then use this sequence to run a BLAST search to probe GenBank for other similar sequences (it is best to use a protein sequence that recovers one or very few sequences per species to simplify tree reconstruction. If too many sequences per species are encountered at this step, select an alternative gene).

User could submit a protein sequence to run a homologous search through NCBI BLAST packages (33) with a specified E-Value threshold.

The W-curve does not require gap-stripped, reduced sequences to run efficiently.

These MSAs were used as seed sequences to run PHYML_v2.4.4 using Jones-Taylor-Thornton (JTT) model [ 82].

To analyse the contribution of TEs to diatom genomes we used the diatom TE DNA sequences to run the RepeatMasker program [ 18] on both genomes.

Hence, we altered the default Muth Manber algorithm to return the percentage of nucleotides involved in matches to library sequences and to run efficiently on very large datasets.

A specific interface has been developed to perform various operations such as the intersection or the difference between two gene carts, to extract sequences or to run multiple alignments via the plugged Jalview software (36).

Subsequently, we aligned all GPRC5A-D sequences and used conserved sequence motifs detected to run further blast searches.

After a signal of safety or anxiety, the remainder of the sequence is permitted to run its course.

The matrix R, estimated from neutral sequence prior to running SiPhy (see Section 2), models the substitution pattern between the four nucleotides when they are evolving under no selective pressure, and captures neutral substitution biases, such as transition versus transversion.

To identify TEs in these sequences, the users have to run RepeatMasker and/or Censor with each homologous sequence as a query repeatedly [ 8, 9].