Sentence examples for sequence seed from inspiring English sources

The alignment starts from finding an identical sequence seed of 5 bp on both sequences.

The authors also found some enrichment of coding sequence seed matches to highly expressed miRNAs in the Ago1 targets.

Thus, coding sequence seed matches appeared to be effective in decreasing mRNA levels, but 3'-UTR seed matches were more effective.

These comparisons strongly suggest that 3'-UTR seed matches are more important than coding sequence seed matches for the regulation of mRNA levels [6], [43], [50], [53] [55].

As a further test of the significance of coding sequence seed matches, we compared how well conserved they were compared to 3'-UTR seed matches.

Of the high confidence targets with 7mer coding sequence seed matches, 25% and 35% of the mRNAs contained conserved seed matches across the same species.

On further analysis of this excluded dataset, we have observed that due to the large number of sequences in independent sequence, seed-based PSSM profile was not able to annotate all the sequences in the given family and the average family coverage have been fallen below 50%.

We generated 2 N genomes with N of them belonging to class 1 and the other N belonging to class 2. In the two classes, genome lengths and background models are the same, but sequence seeds are inserted with different strategies (seed sequences, numbers of seeds, lengths of seeds and densities of seeds).

The mitochondrial genome was also compared to a database of all previously sequenced seed plant mitochondrial genomes with BLAST to identify putatively functional conserved syntenic regions [1].

Although the current sample of fully sequenced seed plant mitochondrial genomes is still taxonomically sparse, some preliminary trends in repeat content are emerging.

With fewer repeats than all previously sequenced seed plant mitochondrial genomes, Vigna represents an extreme with respect to repeat content (Figs. 2 and 3).