Sentence examples for sequence placement from inspiring English sources

I note in passing that there are three particle systems with short range interactions that surprisingly have an infinite number of bound states, ({E_j}_{j=1}^infty ) with asymptotic geometric sequence placement, i.e. (E_{j+1}/E_j rightarrow alpha < 1).

Sequence placement, however, would ideally incorporate the constraints of both maps, requiring the development of new tools for this purpose.

For example, sequences that overlap on the optical map but do not have any sequence similarity in the overlap region indicate problems with sequence placement.

The Sequence Placement problem is analogous to a well-studied problem in the field of Operations Research called Interval Scheduling (Kolen et al., 2007).

Translating 'sequences' to 'jobs' and 'matches to the optical map' to 'scheduling in a time interval on a processor', we can see that Sequence Placement is just a special case of the Interval Scheduling problem.

Finally, the methods presented here were constrained by the fact that the restriction enzymes chosen to construct the optical maps might not be optimal in terms of informing the sequence placement process.

To analyze query sequence placements at internal branches, we use the RAxML −g constraint tree option to obtain a rooted tree of the query sequences.

Analogously, in our pipelines, when the delimited species from 454 sequence placements contain one of the full-length reference sequences (see step 4 in 2.2), we consider this as a 'match'match

As discussed in Section 3, the assembly graph contains valuable information about the order of sequence placements, information that we are interested in combining with the optical map data.

It is therefore ideally suited to confirm and complement results gathered by other long-range strategies to generate genome assemblies – namely fingerprint-contig and genetic mapping strategies, as well as fosmid end-sequence placement and mate-pair analyses.

This verified the coding sequence and placement of the initiation and stop codons.