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Exact(14)
Otherwise, the sequence of residues is changed randomly and tested again.
However, it is unknown whether their biological activity depends on the degree of deacetylation or the sequence of residues within the oligomer.
Perhaps naively we may have expected a peptide corresponding to a contiguous sequence of residues involved in the Elk-1 dimer interface would have been ranked high in the docking simulation, but this was not the case.
Au(1 1 1) surface first adsorb the dipeptide Gly-His among the four amino acids and the sequence of residues in a peptide can significantly influence adsorption geometry of amino acids rather than the adsorption rate.
Having identified a site by the GNM, we then need a sequence of residues on the protein that will be in contact with the binding peptide.
We choose this sequence of residues using either of the following two approaches: (i) If the protein exists in complex with other proteins, and if the site determined by the GNM lies in an interface in the complex, then the complex is used to determine this sequence of residues on the surface.
Similar(46)
This deletion changes the amino acid sequence of 54 residues (residues 432 to 485) in the C-terminal of PhoR.
In many eplets, the residues are in short linear sequences, but many other eplets have discontinuous sequences of residues that cluster on or near the molecular surface.
The multiple sequence alignment of all experimentally confirmed CAR protein sequences revealed fingerprint sequences of residues which are likely to be involved in substrate and co-substrate binding and one of the three catalytic substeps, respectively.
TALEs have a modular DNA-binding domain (DBD) consisting of repetitive sequences of residues; each repeat region consists of 34 amino acids.
P48, P60, and P69 were constructed by ligating the coding sequences of residues 48 100, 60 100, and 69 100, respectively, to the 5′-end of the maltose binding protein (MBP) gene using a linker that translates to GGCGG.
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