Sentence examples for sequence matching method from inspiring English sources

It has been previously demonstrated that a sequence matching method between probes increases cross-platform consistency and reproducibility [ 12].

In order to compare equivalent regions, the domain regions were retrieved employing HMMALIGN[ 16], sequence to profile matching method against the PfamA database[ 37].

We computed for each method the fraction of TPs with E-value up to each method-specific threshold, with query and subject sequences matching significantly to the same CD, the same CDD superfamily [ 26], different CDD superfamilies, or with at least one sequence matching no CD (see Methods).

Quantitatively, among 14,086 test sequences, on an average the proposed method misclassified only 21.1 sequences whereas baseline BLAST score based global feature matching method misclassified 362.9 sequences.

SeqMap 2.0 provides a scalable method for sequence matching, clustering and alignment, and also addresses challenges specific to 454 pyrosequencing data output, namely base stutter and redundant coverage of each RIS.

Co-existing domains were predicted employing HMMPFAM[ 16] and RPS-BLAST[ 18] sequence to profile matching methods.

An alternative to using suffix/prefix array methods in sequence matching is to build a hash table to identify exact seed matches.

Our results show that HMM-based models are statistically reliable enough to detect a more specified motif among general G4 structures in genomic sequences, narrowing down potential G4 sequences predicted by the existing pattern matching method.

Comparative analysis of these pathways relies on network alignment methods, much the same way as sequence matching and alignments are used for individual genes and proteins.

Hausdorff distance is widely used in the temporal sequence matching and recognition [38, 39]. Figure 9 gives the flow chart of recognition method.

We compare this method with the Genbank-BLAST search technique that is widely used for sequence matching.