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This may cause transfer issues where contigs have been re-ordered with relation to the previous genome build and in cases where new sequence has been incorporated into the new build.
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TM-MOTIF, a tool to detect motifs in the set of aligned OR sequences, has been incorporated into the database.
A vector encoding a modified β-conglycinin α′ subunit (4novokinin-α′) in which four novokinin sequences have been incorporated by site-directed mutagenesis was introduced into somatic embryos by whisker-mediated gene transformation to produce a transgenic soybean.
All sequences have been incorporated into a publicly available database and form the basis for subsequent microarray design, SNP detection and polymorphism analysis, and the placement of novel markers on genetic linkage maps.
Insulator elements and buffering sequences have been incorporated to protect the reporter gene from position effects.
To examine how many of these Asian (YH) and African (NA18507) novel sequences have been incorporated into GRCh37, we aligned [ 20] these novel sequences to GRCh37.
Analysis of complete genome sequences have turned up numerous cases where TE sequences have been incorporated as exons into mRNAs, and it is widely assumed that such 'exonized' TEs encode protein sequences.
With the advance of next-generation sequencing (NGS), deep sequencing has been also used to discover miRNAs systematically at a phenomenal rate [ 28, 31], and predicted miRNAs from deep sequencing have been incorporated into miRNA databases [ 23].
Theoretical predictors for efficient and target-specific silencing RNA sequences have been incorporated in numerous dedicated software, but still always need to be verified first in the relevant target cells and finally in respective animal models in vivo.
At the present release, the next-generation transcriptome sequencing data has been incorporated into gene models and splice variants.
However, 24 of the transcripts were found with nearly complete coverage spanning one or more BAC clones which should provide better local sequence coverage until complete clone information has been incorporated into the genome assembly.
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