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In particular, TFBSs tend to have high DNA duplex stability score if a TF prefers to bind both strands of the promoter sequence (Figures 1(a) and 1(b)) and low DNA stability score in the opposite case (Figures 1(c) and 1(d)) The above reasoning seems to provide a simple logic for filtering the real TFBSs.
Geneious was used to manage all sequences and to construct the sequence figures found in this manuscript [57].
A process of condensation and segmentation is then initiated in an anterior-to-posterior sequence (Figures 3C and 3D where serosa was removed).
However, our data did not show any functional deficiency in GHP, the H1-3 regiofs of which were all exchanged with the GFP sequence (Figures 1B and 3C).
We obtained strong hits against three sequences in AgSmc3, labelled WIS1, WIS2, and WIS3 (Wapl Interacting Sequence; Figures 3A and B and Supplementary Figure 2a), as well as some potential hits, primarily on the N-terminal of AgScc1 (Supplementary Figure 2b).
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The corresponding RMSF plots revealed the flexibility profiles for the complete protein sequence (Figure 5C-D).
Several morphing steps can be combined to a sequence (Figure 13).
A different behavior can be observed in the case of the Hallmonitor sequence (Figure 17).
This sequence contained an ORF that differed from the A6 consensus sequence (Figure 5A).
γCOPΩ35 contains the entire γCOP coding sequence and also ∼5.8 kb of upstream sequence (Figure 1E).
The set of DBL6ε sequences produced a curve typical of a highly variable sequence (Figure 4B).
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