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Sequence reactions were analyzed using an ABI 373 DNA sequencer and sequence data were assembled using SeqEd 675 DNA Sequence Editor, version 1.0.3 (Applied Biosystems).
Raw sequence data were imported into BioEdit, version 7.2.5, sequence editor (Hall 1999) and corrected manually for errors.
The sequences were edited manually and assembled using the Mega 3.1 sequence editor [51].
The resulting protein alignment was reviewed and finalized using the multiple alignment sequence editor MASE.
Partial F gene sequences were aligned and genetic distances were calculated using Simmonics v1.9 sequence editor package (www.virus-evolution.org).org
Subsequent sequence manipulation was carried out in the Simmonic sequence editor package [18] (available from http://www.polio.vir.gla.ac.uk).
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Sequences were generated on ABI model 377 automated sequencer (Applied Biosystems) and aligned to HPV sequences at Genbank using BioEdit Sequence Alignment Editor 7.0.9.0.
Hall, T. BioEdit Sequence Alignment Editor for Windows 95/98/NT/XP/Vista/7 (Ibis Therapeutics, 2013); http://www.mbio.ncsu.edu/BioEdit/bioedit.html.html
Hall, T. A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT.
Waterhouse, A. M., Procter, J. B., Martin, D. M., Clamp, M. & Barton, G. J. Jalview version 2 a multiple sequence alignment editor and analysis workbench.
Waterhouse, A. M., Procter, J. B., Martin, D. M. A., Clamp, M. & Barton, G.J. Jalview version 2 a multiple sequence alignment editor and analysis workbench.
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