Sentence examples for sequence discrepancy from inspiring English sources

Simply flagging every site of sequence discrepancy from reference would have generated 180,628 predicted SNPs.

There are several possibilities for the sequence discrepancy in this study.

The total mitochondrial sequence discrepancy was 7.43 kb absent from Sn79 but present in Sn4 and SN15.

Those sequences start at the same position and are identical (duplicates) or vary in length, or contain a sequence discrepancy [ 28, 29].

The difference in affinity might represent the difference in production host (S. cerevisiae vs E. coli) but also the sequence discrepancy since the purified enzyme from E. coli was also tagged with a N-terminus His6 tag.

To eliminate the influence of different gene lengths and sequence discrepancies on expression calculations, gene expression levels based on read counts obtained by RSEM (version v1.2.15) were normalized using FPKM (fragments per kilo bases per million fragments) transformation (Li and Dewey 2011).

These sequence discrepancies are saved as Flagged Deviations from the Model (FDM) sequences and provide sufficient information for sequence reconstruction using the transcriptomic reads.

Sequence discrepancies internal to the gene model are corrected by identification of bridging sequences that span introns or contiguous reads that eliminate inserted introns (Figure 1, C).

To study the effect of the new sequences resulting from high throughput biotechnologies, we identified sequence discrepancies that might be due to fragmentary or erroneous sequences using an empirical rule-based approach (described in Methods).

A large fraction of sequence discrepancies can be resolved by adjustment of the requirement for transcript sequence coverage depth and inclusion of additional gene models from the BestModelv1 set.

Although the method used here to detect sequence discrepancies may also identify a number of naturally occurring proteins, such as splicing variants, our main goal was to construct a set of reliable sequences for use in the following experiments.