We also applied the original sequence data set for Bayesian inference.
The G+C content was 38.2% in the aligned sequence data set.
Known microRNAs in the sequence data set were identified using miRBase as reference database (release 16; http://www.mirbase.org/).org/
First, BLASTN is used to search the query sequence against the complete sequence data set for that domain.
This analysis is designed to create a conservative estimate of the genes that contribute to cellular transformation based on their representation in the Illumina sequence data set.
These tests using BLAST were employed as a complement to the primary results on barcode loci derived from the empirical comparative sequence data set.
Another simple control we suggest is to add sequences known to be unrelated to the sequence data set to the network (see the discussion in Results Section III).
The aligned sequence data set for the whole coding region of Seg-3 from 54 isolates (Table 1 and 2) was used for phylogenetic analyses.
DNA sequence targets, used to interrogate all raw reads in a sequence data set, are supplied as a multi fasta file using the –s option.
