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The average sequence coverage was 38.7-fold.
The genome average sequence coverage for each genome was calculated using qualimap v2.1.236.
Approximately 22 peptides were sequenced for each protein hit resulting in minimum sequence coverage of 46%.
a, Distribution of sequence coverage of reference genome by 454-reads is random.
Finally, of 173 MIRNA loci, 17 completely lacked sequence coverage in at least one strain.
The overall sequence coverage for fibrinogen determined by Mascot was between 60-75%.
The very large number of reads permits extensive sequence coverage after the selection process.
Sepulveda, N. et al. A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data.
The sequence coverage of each position in the element was calculated using mpileup command in SAMtools v0.1.1938 (mpileup -d 8000).
The sequence coverage of each position in the element was calculated using mpileup command in SAMtools (mpileup -d 100000).
The sequence coverage of mPing, Ping, and Pong were inspected using heatmap and Integrative Genomics Viewer (IGV) v2.3.043.
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