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Sequence context of the polymorphic miRNA-GDF8 interaction in sheep.
The CUG codon is in a strong Kozak sequence context, while the AGG codon is not.
Detecting DNA Modifications from SMRT Sequencing Data by Modeling Sequence Context Dependence of Polymerase Kinetic.
Gene-body methylation (gbM) refers to an increased level of methylated cytosines specifically in a CG sequence context within genes.
Tanay, A. & Siggia, E. D. Sequence context affects the rate of short insertions and deletions in flies and primates.
Aggarwala, V. & Voight, B. F. An expanded sequence context model broadly explains variability in polymorphism levels across the human genome.
Jeong, W. & Kang, C. Start site selection at lacUV5 promoter affected by the sequence context around the initiation sites.
Each domain displays a distinct preference for the sequence context of the phosphorylated residue.
This efficient recognition was surprising, because the uAUG codon of AtMHX has a weak sequence context.
First, DNA methylation patterns are better correlated with histone methylation patterns than with the underlying genome sequence context.
Most likely, TDG and MBD4 mainly function in CpG-contexts, while SMUG1 and UNG2 may operate in any sequence context, albeit with varying efficiency.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com