The 19 Formosan pangolin sequences produced 5 haplotypes and 72 of the 145 seized scales provided useable sequence classified as a further 38 haplotypes.
Based on the LMS distance, this sequence is very similar to a sequence classified as agc_other.
The leaves in the gene-tree correspond to the given sequences and any sequence classified as a pseudogene must have an ancestor in G that belongs to Ψ.
Phylogenetic analyses of these sequences classify them into six families (D1 D6; Figure 1A).
RDP was used to align sequences and classify sequences and to compare libraries.
On 3rd October 2018, GenBank contained 12122 nucleotide sequences classified as from Enterovirus A71.
Any sequences classified as Mitochondria, Chloroplast, Archaea, Eukaryota or unknown (i.e. not classified at the Kingdom level) were removed from the dataset.
Furthermore, sequences classified neither as M7, M8, M9, M10 and M13, nor as the major N or R haplogroups were considered to represent haplogroup M*.
There were slightly less similar matches to sequences classified in the Syntrophomonadaceae and Clostridiaceae families.
Band H also was closely affiliated with two sequences classified in phylum Firmicutes, family Peptococcaceae and genus Desulfitobacterium.
Bands G and K were closely related to published sequences classified in phylum Firmicutes, family Peptococcaceae, and genus Desulfosporosinus.
