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The acid sugar library, circular dichroism data, structural data, sequence alignments, and genome contexts.
Furthermore, multi-locus sequence alignment and whole genome comparison revealed the taxonomic position of the WCS model strains within the Pseudomonas genus.
MFC participated in the sequence alignment and bioinformatic analysis of the genome.
GGLC participated in the sequence alignment and bioinformatic analysis of the genome.
The MAUVE alignment tool was used for multiple genomes sequence alignment and visualization.
Obtained nucleotide sequences were compared with reference japonica genome by multiple sequence alignment and all the nucleotide sequences were translated into amino acid sequences.
SC, JS, and JG performed the genome sequence alignments and assembly.
Users can download OR sequences, study predicted membrane topology, and obtain cross-genome sequence alignments and phylogeny, including three-dimensional (3D) structural models of 100 selected ORs and their predicted dimer interfaces.
Multiple sequence alignment of genomes was carried out and phylogenetic tree was constructed using HKY+G+T substitution model at 1000 bootstrap replicates.
Multiple sequence alignment of genomes of representative CVA2 strain 430895 and other human enterovirus A strains was generated by using ClustalX version 2.0 and edited manually.
9) Please consider adding the following references and discussing them in the text at the appropriate place: Open-Phylo: a customizable crowd-computing platform for multiple sequence alignment Genome Biology 14, R116 (2013).
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