Sentence examples for separates the alignment from inspiring English sources

The SAM/BAM format, together with SAMtools, separates the alignment step from downstream analyses, enabling a generic and modular approach to the analysis of genomic sequencing data.

For instance, while the bird scaffold length plots are widely separated, the alignment length plots cluster more tightly, suggesting that scaffolding performance could vary more than the performance of producing contigs.

We then separated the alignments at the detected breakpoints within the region, estimated MP phylogenetic trees (1000 bootstrap replicates) for the individual sections, and checked for incongruent topologies.

In addition, specificity is ensured by statistically separating the true alignments from spurious matches using phred quality values.

It analyzes patterns of sequence variations and mutations in a multiple sequence alignment, and separates the slowly evolving sites from the fast evolving sites.

Accordingly, following Sperling et al. (2009), we explored the distribution of signal in the alignment by separating the sites with moderate evolutionary rates (i.e., those most likely to represent the most reliable source of phylogenetic signal) from the slowly and rapidly evolving sites (those more likely to convey misleading signal).

In Supplementary Table S1 of Supplementary Materials, we separated the contributions of template alignment and gap penalty scores in ThreaDom.

They also introduced some scoring rules of alignment to separate the seed region from rest of the regions as well as relaxed values for mismatches and wobbles.

We ran jModelTest [ 92] for the remaining DNA sequences separate for the alignments 1-5.

The separate alignment option aligns all sequences against different references separately in a run.

Inconsistent alignment procedures in separate parts of the alignment could also influence the accurateness of the resulting phylogeny.