Exact(6)
Neutral expectations were determined separately for each sequence category, by counting the occurrences of the −10 σ70 hexamers in sets of 1000 shuffled sequences.
For this view we used a more stringent cut-off, based on the overall structural similarities of the 10,000 structures generated, and calculated separately for each sequence as follows.
Areas of hyperintensity were scored separately for each sequence.
This was calculated separately for each sequence of critical trial sessions and the mean taken as the overall score.
These scores were added together for each devalued food, and were calculated separately for each sequence of critical trial sessions (two baseline sessions and one devaluation session with each reward), with the mean taken as the overall score.
Both short and long DNA motifs (4-6 and 8-10 nucleotides, respectively) were analyzed in full transcripts, CDS, 5′UTR and 3′UTR (when the corresponding annotation was available) using MEME [ 66]. Background dinucleotide frequencies were provided separately for each sequence type.
Similar(2)
The 5′ and 3′ positions of splice junctions were mapped separately for each sequencing run (whether single- or paired-ended) using TopHat.
The overdispersion of the forward read distribution is controlled by the parameter σ, which we estimate separately for each sequencing run using maximum likelihood (ML) methods based on the observed forward read distribution for all true SNVs within the sample (see Methods).
Related(1)
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