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Distinctly separated maximum of the irregularities intensity can be found within 50 60° MLAT at ~15 17 MLT, that correspond to the irregularities intensification in North America shown in Fig. 3d.
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An obvious example is between X = 1760 km and X = 1800 km, where the LOMGRAV grid clearly displays two well separated maxima.
Two SSRs separated by maximum 100 nucleotide bases were considered as part of a compound SSR.
Clusters of cis-eQTLs were detected by defining regions in which cis-eQTLs were separated by maximum distances of either 250, 500, or 750 kb.
Using the same parameters as for detection of cis-eQTL clusters (i.e., boxes containing at least three cis-eQTL separated by maximum interval of 500 kb), we calculated for each pair of analyzed tissues which proportion of cis-eQTL−containing regions overlapped between the two datasets.
Separate maximum likelihood phylogenetic trees were prepared for regions R1 through R6 (Figs. 3A F, respectively).
Separate maximum likelihood analyses were run for each alignment.
Therefore, separate maximum likelihood phylogenetic analyses for each GDH family were performed (Figs. 1, 2, 3).
A search combining 200 separate maximum likelihood searches to find the optimal tree was conducted.
Separate maximum parsimony tree (Additional file 3) generated the same topology as obtained by maximum likelihood and Bayesian trees.
To test the hypothesis of a common endosymbiotic origin of algal and plant men genes, we first inferred separate maximum likelihood phylogenies for MenF and MenD.
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