Sentence examples for separate assemblies from inspiring English sources

The GAM program) [ 67] combined separate assemblies produced by the CLC and ABySS assemblers [ 8, 68].

The reads were assembled in three combinations, resulting in three separate assemblies of fox transcriptome: i) assembly of all sequencing reads from both samples; ii) assembly of sequencing reads from the sample of tame fox; iii) assembly of sequencing reads from the sample of aggressive fox.

In the separate assemblies, the genes with high expression levels (ESM1, rbcS) were assembled to a full length transcript in most assemblies.

TopHat alignments were assembled into transcripts using Cufflinks 2.1.1 [ 60], generating three separate assemblies, one for each library.

For each strain and assembler, n = 27 (SOAPdenovo) or n = 10 (AbySS) separate assemblies were produced, in each case iterating K from 31 to 81.

The three separate assemblies for N. tabacum, N. sylvesteris and N. tomentosiformis transcripts were further assembled using GsAssembler.

To evaluate, we performed "separate assembly" by assembling PE reads from G4 and S4 into scaffolds separately, and SE reads from other 10 samples into contigs by using SOAPdenovo [25], [26], and then combined the three parts by using CAP3 [27]; we also performed "pooled assembly" by assembling the pool of all reads using SOAPdenovo, followed by using CAP3 as well.

After the initial separate assembly, the contigs assembled and the remaining unassembled sequences were subjected to a secondary assembly using MIRA.

The Brassica unigenes were assembled using parameters that enabled the separate assembly of transcripts of paralogous genes within each diploid Brassica genome (as these differ by ~15% at the nucleotide level) but the co-assembly of transcripts of homoeologous genes (which differ by only ~3%).

Our results suggest that the cell cycle represents two distinct but overlapping cycles, the transcriptional cycle that is responsible for production of the cellular components, and a separate assembly cycle in which the components are assembled to make two cells out of the old and new components.

This procedure allowed the unambiguous assignment of 2,429,860 reads of 384-bp on average to the corresponding genomic libraries Separate assembly for each library was performed by the MIRA assembler version 3.2.0 using the following parameters: --job = denovo, genome, accurate, 454 -DP:ure = yes -CL:emrc = yes -AL:mo = 50 -ED:ace = yes.