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In the BLAST results from the search against the M. kandleri proteome, the self match of each protein was discarded.
Gene duplications were identified with a focus on proteins in the data set that had a better match within the N. apis genome they reside (excluding the self match) when compared against all other genomes used in the study.
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Self matches were excluded.
The design is characterized by "self matching", in that cases serve as their own controls.
Individuals are motivated to work towards a condition where the actual self matches the ideal self or ought self.
Next, all the gene pairs were sorted by gene name and a filter script was used to remove all the redundant pairs, including self matches and multiple matches.
The gene pairs excluding self matches (CIP > = 70%, CIAP > = 70%) were considered as single-gene duplication and used to the further analysis.
Studies were included irrespective of the type of untreated reference population that is, matched or unmatched untreated women, internal self matching with the pregnancies of the same women before treatment, and women attending colposcopy but not receiving treatment.
We distinguished the different untreated reference populations across studies (matched to factors in the treated group, women with cervical intraepithelial neoplasia but no treatment, self matching or internal controls=before compared with after treatment).
14 A case-crossover study can be thought of as a type of self matched case-control study: for each person, exposure data are collected for the "case" day (that is, the day of the myocardial infarction) and a set of "control" days that were not associated with the event of interest.
"the anchor point were ligatured with the best non-self match".
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