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Other distinctive features of NaviCell, compared to CellPublisher, are using markers for selecting entities on the map, decomposing the map into interconnected modules, systematic representation of entities' modifications and their roles in reactions, and a possibility to discuss each object on the map separately.
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As such they select entities that are continuant through time.
In addition to the graph presentation, the relation among these entities can also be a graphical one, as shown in Figure 5. Figure 5 The selected entities (left) and the oriented graph of their mutual connections (right).
The View objects include three panels, where the user can search and select entities.
Figure 2A shows the change of P-values reported for the top five GO terms with respect to the number of selected entities using two examples with weights, respectively, from network flow simulation and microarray.
Instead, we applied a model integration method based on the output scores and dictionary filtering, in which we used a dictionary-based filter to select entities from the union of the top 10 tagging results obtained by Mallet's n-best option.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com