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Using the attained Entrez Gene IDs as identifiers of genes, we obtained the total lists of both Gene Ontology terms and KEGG pathway descriptors, with which our selected set of genes was annotated and analyzed using the DAVID functional annotation tool [14] with the most recent data update (January, 2008).
We confirmed microarray results through RT-PCR on a selected set of genes (Figure 1D and Table S2).
We compared the time-course expression profiles between FHB-resistant Wangshuibai plants and susceptible Meh0106 mutant plants of a selected set of genes that are critical to the plants' resistance and defense reactions.
From data presented in this manuscript, it is obvious that treatment with increasing doses of AA induces a specific down regulation of expression of a selected set of genes, resulting in an arrest of cell proliferation and, at higher doses, in cell death.
We chose to calculate two separate datasets using SAM (one not stringent, and one stringent) to circumvent the issues that a stringently ascertained dataset might miss relevant pathways (because too few genes are entered in the analysis) or that a larger, less stringently selected set of genes would contain too many false positives.
We confirmed the differential expression of a selected set of genes by qRT-PCR and flow cytometry.
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A selected set of gene-specific primers for DON- and ZEA-induced cDNA libraries was listed in Table 3.
A selected set of gene name taggers with different precision-recall properties could be put together to create an effective multiple strategy to identify gene names in text.
We have used hypothesis-based cDNA arrays and quantitative PCR to quantify the expression of selected sets of genes followed by multivariate analyses in multiple independent samples.
In contrast, equivalent analysis of randomly selected sets of genes provided no information about the host response to critical illness complicated by pneumonia.
To rule out the possibility that any given FENR arises accidentally and does not have a biological meaning, 12 randomly selected sets of genes of the size 500 1000 were processed by GO-MINER, establishing a negative control.
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