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The putative conserved microsyntenies were identified as segments of model fish chromosomes with a set of adjacent genes that are homologous to a set of adjacent genes in catfish that are reflected by their colocation within a single BAC contig.
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While MDFF with maps in this resolution range cannot be used to determine the locations or conformations of amino acid side chains, loops, or random-coil segments of models, it can show the positioning of α-helices in the structures.
Furthermore, the digital environment allows incorporation of inhomogeneous density within and between body segments of a model.
Blood speed is calculated in the different arterial segments of the model.
We reduced the 55 arterial segments of this model using two procedures.
The differing presence of secondary structure elements in the tail segments of the models is a result of the high variability in sequence and length.
An octree filter was applied to most segments of the models to reduce the number of points and increase manageability of the data set with minimal cost to resolution.
The upper two subplots show the velocity model cross-section and average 1-D velocity model in the target segment of the model bounded by the vertical dashed lines in the upper panel.
Therefore, there would have been twelve free caudal segments and one tail club segment, for a total of thirteen segments to model in the tail.
Further reductions in the number of 1D model segments of the 55-artery model by lumping aortic segments and arteries that branch off the aorta into 0D models, starting from the iliac bifurcation, yields relative errors in aortic pressure <5% (Fig. 4).
A weak upper mantle layer promotes obduction of the oceanic lithosphere in the western segment of the model.
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