Sentence examples for segments of elements from inspiring English sources

Currently for LTR-elements (only) RE ANNOTATE checks for the possibility of re-arrangements that result in multiplication of segments of elements, and generates models of such re-arrangements (see below and Implementation).

This finding together with the predicted activities of the Cas proteins prompted the hypothesis that CRISPR-Cas is a system of adaptive immunity that integrates short genomic segments of selfish elements (viruses or plasmids) into specific loci in prokaryotic genomes and then employs these inserts to abrogate the replication of the cognate agents via a RNAi-like mechanism [ 5].

Segments of coding-elements were detected, however, in the genome assemblies of these strains when TYA and TYB sequences were used as query sequences, which suggests that these strains may carry very few intact Ty elements (Additional file 2: Table S1).

A run is defined as a maximal segment of consecutive elements of the same type (e.g. the sequence "000011000" contains three runs).

If the progenitors of a chimeric element, but not the element itself, are both represented in the reference library, then R EPEATM ASKER will report separate hits to each progenitor reference, and RE ANNOTATE will construct separate element models for segments of the chimeric element.

Such a rearrangement could result from tandem duplication of a segment of an element, or from inter-element recombination events (e.g. between LTRs).

Having the numerical series of PU values in various segments for different types of elements, we estimated if their distribution changes after dinucleotide reshuffling with the two-sided Wilcoxon rank-sum test as shown in Table 5.

Substitutions were designed to alter segments of the binding element to determine if any specific region played a greater role in ATAF2 binding.

The number of families (Table 2) was probably overestimated, since as a result of the masking process, some of the fragments we found may in fact be different segments of a single element.

This is consistent with our previous findings following bisulphite PCR of a small segment of this element [ 1].

The probes used in the hybridization experiments were derived from the internal region of the reverse transcriptase segment of each element.