Sentence examples for segments of alignment from inspiring English sources

c Number of segments of alignment sufficiently similar to imply recombination.

Gblocks [ 22] was used to remove poorly aligned segments of alignments, and the minimum length of a block was set to 100, and the maximum number of consecutive non-conserved positions to four.

Second, PSI-BLAST alignments may have longer segments of ungapped alignment because the score associated with ungapped alignment is not reduced by the probability of entering another node.

In practice, dissectHMMER considers short non-globular aligned segments of ≤10 alignment positions as part of the fold-critical segments.

We wanted to know which was the most likely segmentation in two segments of the alignment according to site likelihoods for all topologies.

In an alignment of such genomes, historical recombination events define segments of the alignment with separate ancestral relationship.

Alleles from each gene were extracted and concatenated for each genome, the panel of concatenated sequences was aligned by using ClustalW software (31 ), and the core segments of the alignment were used for construction of a neighbor-joining phylogenetic tree by using MEGA software.

Segments of the alignment were assigned to structural motifs based on the KcsA structure.

To identify individual putative breakpoints in each recombinant sequence we used a sliding-window, bootscanning approach, which computes a bootstrapped maximum-likelihood phylogenetic tree for overlapping segments of the alignment (in our case, each 20 nucleotides) [52].

Core segments of the alignment that are shared among all isolates included in the analysis were identified and concatenated.

Core segments of the alignment that are shared among all isolates included in the analysis were identified and concatenated by using Phylomark software (23 ).