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The ribose-phosphate backbones of the two proposed duplicated segments map onto each other extremely closely.
About 47% of the segments map to intergenic regions, 5% to promoter regions and 46% to bodies of RefSeq genes (Supplementary Table S1C).
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Step 3: Segments mapping results filtering.
Segments mapping results are multiple or false strand in some cases.
The number of Cluster 4 CCGG segments mapped onto the X chromosome is disproportionately high.
Therefore, we analyzed results of ChIP assays to determine whether the MLL-bound chromatin segments mapped to CGIs and to evaluate whether the bookmarked segments included MLL1 morphemes.
In just 17 cases the ODS of one assembly pointed to an ODS on the other assembly (i.e. segments mapped to different chromosomes) (Additional File 5).
Mapping software such as bwa [ 28] will truncate or "soft-clip" reads that consist of two segments mapping to distinct locations, retaining the mapping position of the longer fragment.
In brief, we find that the crucial points are how to design an appropriate IUM reads division strategy and how to search the spliced site from the segments mapping results.
(c) The segment map of (a).
A segment map is a refined version of an axial map, where every axial line is broken down into smaller segments at each intersection.
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