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Enriched segments are uncommon but more frequent than expected by chance (based on comparison to shuffled segmentation patterns) with 209 of 2442 multigenic segments having a significantly enriched term (P = 0.00324) (Additional file 3: Table S2).
We compared the number of segments with one or more enriched terms to the number of segments with one or more enriched terms in 10 shuffled segmentation patterns using Fisher's exact test.
It is of interest to find analytically bounds on the bias of the objective function value due to missing segmentation under various segmentation patterns and specifications of utility.
To identify segmentation patterns, rmodel considers all possible subdivisions of a probeset.
We can predict signatures in probeset segmentation patterns for the different cDNA priming for differences in stability of transcripts that differ only in use of tandem APA sites in a common terminal exon (Figure 3).
Quantitative RT-PCR validated the probeset segmentation patterns identified by the GV-MII comparisons for Atg5, Cnot2, Baiap2l1, G6pdx and Mycbp transcripts (Figure 6), a group of genes specifically chosen to validate the truncations that were and were not consistent with known APA sites.
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During the course of these 200 minutes, an anterior and a posterior organizing center, established in the oocyte, normally interact through a cascade of segmentation patterning genes to form the fourteen segments that comprise the fly.
Our segmentation pattern correlates with Hi-C based physical interaction domains, but segments are generally much smaller than domains.
Zebrafish nephrons show considerable conservation in structure and function compared with mammalian nephrons, with both exhibiting a common glomerular architecture and a similar tubule segmentation pattern.
More recently, researchers have created customized instructional manuals based on an individual's own event segmentation pattern to create a unique guide for the learner (Mura, Petersen, Huff, & Ghose, 2013).
They control the correct segmentation patterning of these structures and define their antero-posterior identity.
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