"seems incompatible" is correct and can be used in written English.
For example, "The new regulation seems incompatible with existing company policy."
Defective design seems incompatible with an omnipotent intelligent designer.
A literal interpretation of Genesis seems incompatible with the gradual evolution of humans and other organisms by natural processes.
A depression of 6 10°C in sea surface temperatures is suggested by deep-sea core analyses, but this seems incompatible with terrestrial evidence.
Their presence (and extraordinary size, in the latest-occurring members of the genus) seems incompatible with life in the constrained space of a burrow.
The apparent altruistic behaviour of many animals is, like some manifestations of sexual selection, a trait that at first seems incompatible with the theory of natural selection.
At first glance, Mr. Crowe's brash Aussie persona seems incompatible with the gentle, polite and soft-spoken John Nash of today.
What seems incompatible with Naim's whole thesis is the fact of where power is actually concentrated, and increasingly so: in money.
These are now simply snapshots of a past that seems incompatible with the present, relics mistakenly plucked from the wrong photo album.
In the case of Fe8, the magnitude of this gap deduced by Landau Zener measurements seems incompatible with the value calculated by using the Hamiltonian determined by spectroscopic measurements.
Their initial enthusiasm now seems laced with doubt: how will they juggle their careers with the other jigsaw pieces of their lives, that are coming together to paint a picture that seems incompatible with the demands of their specialty?
The second argument is that psychologism seems incompatible with standard arithmetical theory, which insists that infinitely many numbers actually exist, because clearly there are only a finite number of ideas in human heads.
