Sentence examples for section of the alignment from inspiring English sources

Because the other sequences were aligned to the D. melanogaster genome, any section of the alignment where the sequence for D. melanogaster was unavailable would be unreliable and was excluded from further analyses.

Because the mono-SSRs considered here are 8 nt or longer, a mono-SSR locus is a section of the alignment with eight sites or more.

In this section of the alignment, ancestral sequences of PpDAM genes shared the same nucleotides with a probability higher than 0.95, except near PpDAM1 and PpDAM3 genes at the potential positively selected site.

In our data, the P. falciparum and P. yoelii sequences are conserved in the section of the alignment containing two copies of the G-box, which has consensus (A/G NGGGG(C/A).

Each alignment contains core-regions that correspond to the most reliably alignable sections of the alignment.

The consensus sequences were first aligned with CLUSTAL and the 5' and 3' sections of the alignment (see Figure 8) separated out into individual files from which HMM models of each were created with HMMER http://hmmer.janelia.org.org

The subgrade stiffness of some sections of the alignment will need improvement to meet minimum strength required for a highway pavement.

CSS and RSS are plotted within a sub-section of the alignment in Additional file 7. Female BALB/c and C57BL/6 mice aged 6-8 weres were obtained from the specific pathogen-free unit at the MRC National Institute for Medical Research (NIMR), London.

Sections of the alignment with more than one third of missing data were removed.

This function prints a coloured RC-MSA representation of the sections of the alignment in which the reference alignment and the alignment to be inspected differ.

First, we visually compared alignments for congruence in their ability to align sections of the alignments (especially the inner core) using AltAVisT [54] and the overall sequence identity calculated from each alignment.